PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G176800.1
Common NameB456_001G176800, LOC105771122
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 229aa    MW: 25828.8 Da    PI: 8.447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G176800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-1794144255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +g+++AeIrd + +g   r++lg+f++ae Aa a+++a+++  g
  Gorai.001G176800.1  94 SYRGVRKRP-WGKFAAEIRDSTRRG--VRVWLGTFDSAEAAALAYDQAALSTQG 144
                         69*******.**********43343..**********************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-3394158IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2194153IPR016177DNA-binding domain
PfamPF008474.0E-1294142IPR001471AP2/ERF domain
PROSITE profilePS5103222.86694152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2994153IPR001471AP2/ERF domain
CDDcd000185.15E-1795152No hitNo description
PRINTSPR003673.5E-1095106IPR001471AP2/ERF domain
PRINTSPR003673.5E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDPSFLQALN SDMLLQSPRS LLECFSSNNK LFLDPDFLSF DDILHPKSLS PPPQSTSLSY  60
NDWSTESSDS ASCGLYHSRS KKREEKEEPN KEKSYRGVRK RPWGKFAAEI RDSTRRGVRV  120
WLGTFDSAEA AALAYDQAAL STQGHKAVLN FPTETVRESL RNMNYHCQEG TSPAIELKQR  180
NYLQRKSLAK QNKKQQSLQA KNNVVVLEDL GSDYLEQLLT TSQTASSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A8e-2591152263ATERF1
2gcc_A8e-2591152263ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447981.11e-170PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC89e-51ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2PT061e-170A0A0D2PT06_G
STRINGPGSC0003DMT4000348737e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2243145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-41ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]